PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_015220_dofr.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 225aa    MW: 25428.5 Da    PI: 5.2821
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_015220_dofr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.7e-111491891055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         rrRR++iN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Bv1_015220_dofr.t1 149 RRRREKINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 189
                         9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-15138205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.472139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-13144197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-12145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.06E-10148193No hitNo description
PfamPF000101.4E-8149189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MIEQGNLSLF TSPFPTTPVN VDGSQVGFVE DSESDNLTSP QNDSEVELKR KHTTLELEAE  60
EKLKAAPKKK VRVSKDRGKK IIESKQNDEE DESNNKMGER ENSDDESKAC EQNSEGENSA  120
SKELIVVTSK GKKRANRGSA TDPQSLYARR RREKINERLK ILQNLVPNGT KVDISTMLEE  180
AVQYVKFLQL QIRLLSSDDF WMYAPIAYNG VDISLYKRIS PFLLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131151KKRANRGSATDPQSLYARRRR
2148153RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688176.11e-163PREDICTED: transcription factor PIF3
SwissprotQ84WK02e-53BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A0J8CZA71e-165A0A0J8CZA7_BETVU; Uncharacterized protein
STRINGVIT_18s0001g09210.t012e-55(Vitis vinifera)
STRINGGLYMA17G35423.17e-55(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.12e-54ROOT HAIR DEFECTIVE 6-LIKE 2